PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G21780.1
Common NameLOC102710179
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 333aa    MW: 36404 Da    PI: 7.1877
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G21780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.12.5e-12193218126
                   --S---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                   y   +C+++ +tG+C yGd+CkF+H+
  OB02G21780.1 193 YQPDICKDYKETGYCGYGDSCKFMHD 218
                   67789********************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.96E-9191223IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7192219IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878192220IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-12193223IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-10193218IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.109.9E-14261313IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139204.0E-8271312No hitNo description
SuperFamilySSF578503.26E-13271314No hitNo description
CDDcd001624.91E-7272313No hitNo description
SMARTSM001842.0E-4272309IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.571272310IPR001841Zinc finger, RING-type
PROSITE patternPS005180287296IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MADDGGGGGG DAGSGGSAPV CSFVRKPPKN IRKRPTAPAG SDDEDDDSGA IAAARAKKAP  60
SSTSKLFFSS ADSSSEPRRF QYESSRTIQA STDSRATATL ETETEFDRDA RAIRERQLKQ  120
AEESLKKNPS APGSASGSGS GSGSGEVYKG IHGYTDYKAG FRREHTVSSE KAGGSHGPLR  180
ASAHIRLSAR FDYQPDICKD YKETGYCGYG DSCKFMHDRG DYKSGWQIEK EWEEAEKARK  240
RRIAMRGGDG SDEEAGEEDD DDDDEEALPF ACYICRQPFV DPVVTKCKHY FCEHCALKHH  300
SKNKKCFVCN KPTLGIFNAA QEIRKKMAQD KKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2csy_A3e-202683271473Zinc finger protein 183-like 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8315670.0CT831567.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA018I20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006647193.10.0PREDICTED: zinc finger CCCH domain-containing protein 15
SwissprotQ6K4V31e-179C3H15_ORYSJ; Zinc finger CCCH domain-containing protein 15
TrEMBLJ3LC110.0J3LC11_ORYBR; Uncharacterized protein
STRINGOB02G21780.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80713645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-116C3H family protein